Since its establishment in 1999, the Institute has partnered with the following institutions in its research and other activities:

Anthony Aguirre Memorial Foundation
Asian Development Bank (ADB)
Asian Development Research Forum (ADRF)
Asia-Pacific Research and Training Network (ARTNeT)
Center for Economic Policy Research (CEPR)
Central Institute for Economic Management (CIEM)
Centre for Strategic and International Studies (CSIS)
ASEAN Secretariat Research Group
Commission on Higher Education (CHED)
Congressional Planning and Budget Office (CPBO)
Department of Agriculture-Bureau of Agricultural Research (DA-BAR)
Development Bank of the Philippines (DBP)
Department of Foreign Affairs (DFA)
Department of Labor and Employment (DOLE)
Department of Trade and Industry (DTI)
Economic Research Institute for ASEAN and East Asia (ERIA)
East Asian Development Network (EADN)
International Development Research Centre (IDRC)
Japan Research Institute
Konrad–Adenauer–Stiftung (KAS)
Korea Institute of Finance (KIF)
La Salle Institute of Governance (LSIG)
Metropolitanbank and Trust Company
National Economic and Development Authority (NEDA)
Philippine APEC Study Center Network (PASCN)
Philippine Business for Education (PBEd)
Philippine Chamber of Commerce and Industry (PCCI)
Philippine Exporters Confederation, Inc. (PHILEXPORT)
Philippine Institute for Development Studies (PIDS)
Senate Economic Planning Office (SEPO)
Seameo Regional Center for Graduate Study and Research in Agriculture (SEARCA)
Sumitomo Foundation
United States Agency for International Development-Philippines (USAID)
UP School of Economics
The World Bank
Universiti Tun Abdul Razak, Malaysia (UNIRAZAK)